PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05725.30
Common NameJCGZ_03450, LOC105632315
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 294aa    MW: 32935.6 Da    PI: 5.506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05725.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-20152202255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Jcr4S05725.30 152 HYRGVRQRP-WGKYAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 202
                    7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-33151211IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23152211IPR016177DNA-binding domain
PfamPF008479.0E-15152202IPR001471AP2/ERF domain
CDDcd000187.76E-32152210No hitNo description
PROSITE profilePS5103224.236152210IPR001471AP2/ERF domain
SMARTSM003806.5E-38152216IPR001471AP2/ERF domain
PRINTSPR003671.0E-13153164IPR001471AP2/ERF domain
PRINTSPR003671.0E-13192212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MATEAQLTSA LELIEQHLLG DLLSPVSSSC SSSTSSTDSS ISISDYFNPN DTDDDFLQFE  60
AKPQFIDLTT PKSFEFDSNS LFEFESKPQI PQSFGITQSN NKDFFDFDSK PQIQVNRKPS  120
LKISLPNKTE WIQFAKSNQE PVQSNSVEEK RHYRGVRQRP WGKYAAEIRD PNRKGTRVWL  180
GTFDTAIEAA KAYDRAAFKL RGSKAILNFP LEAGKLNTNA DEGNQRKRTR ESEIVEVEAK  240
KVVKREETER DVALTPSSWT TSWDSGNLKG VFSLSPSSPL SPHPALGYAQ LAVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29151211161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070057.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A067L7340.0A0A067L734_JATCU; Uncharacterized protein
STRINGPOPTR_0001s15400.11e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.12e-65ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]